Quickly scripting a grid-search for parameter tuning
Finding the right set of parameters is quite important in a lot of research - machine learning and computational neuroscience are two fields that I know of. I recently had to ascertain the optimal parameter set for my simulations too. I came up with a quick script to do it for me.
Using NEURON - Part I
Tinkering with OpenLayers and JS - Cajal - a hacked up neuroscience research map
I was tinkering with JavaScript and OpenLayers recently and came up with a web application that shows the different Neuroscience labs on the world and some summary information on them. Still needs a lot of data to be really useful, but it's a start.
Checking your LaTeX sources for spelling errors with Hunspell
Some tips and tricks for running simulations on a cluster
I use the cluster here at university to run my simulations in Nest. This post documents some tips and tricks I've come up with to make my cluster tasks easier.
Calliope - helping you keep a diary - in LaTeX!
Most researchers keep a research journal where we note down our musings, notes and so on. While a paper diary is still quite common, I'd really prefer something on my laptop/computer. There are various applications out there for journal writing, but none of them really match up to good old LaTeX. I've written a simple script that makes it really easy to maintain a journal using LaTeX - Calliope.
sli.vim - syntax file for the NEST simulator's SLI language
New Zaphod release - v0.5.7
I've released a new version of Zaphod - A LaTeX change tracking tool that I've been working on recently.
Zaphod - a LaTeX change tracking tool
Introducing Zaphod - a Python script that attempts to help LaTeX users collaborate over their academic writing. It uses the power of Git to track changes, latexdiff to generate a PDF with annotated additions and removals from the document, and provides a simple interactive review tool that lets the user pick what changes they want to accept. You can use Zaphod to track changes in your LaTeX documents.